Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2770039 chr13:114177174 C/T 0.000217 175 24.17 30.63 3.7 KM Plot
PCPG rs2770040 chr13:114177293 T/C 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2770041 chr13:114177369 G/A 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2785620 chr13:37623269 C/T 0.000301 178 4.17 24.47 25.87 KM Plot
PCPG rs2801799 chr13:37647092 G/A 0.000339 177 4.17 24.23 25.87 KM Plot
PCPG rs2805606 chr13:114152292 A/G 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2805613 chr13:114165557 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2805615 chr13:114170879 T/C 4.67E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2834157 chr21:34616545 A/G 0.000308 175 25.08 31.2 20.37 KM Plot
PCPG rs2834158 chr21:34617213 C/T 0.000482 178 21.9 30.63 22.43 KM Plot
PCPG rs2835570 chr21:38439504 A/G 4.44E-6 178 25.17 25.87 3.7 KM Plot
PCPG rs2835571 chr21:38440552 T/G 4.52E-6 178 25 26.57 3.7 KM Plot
PCPG rs28368288 chr7:23806683 A/C 0.00033 176 25.4 25.67 NA KM Plot
PCPG rs28372690 chr3:122283095 G/A 9.44E-5 174 25 28.93 10.3 KM Plot
PCPG rs2839831 chr2:61582717 A/G 6.43E-5 178 23.43 29.88 10.3 KM Plot